C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000875_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm144 VISTA 9606 12:113632311-114233611
GeneTranscriptPositionBiotype
ENSG00000122965 (RBM19)
RNA binding motif protein 19 		ENST00000261741 (RBM19-001) 113822057-113966371 protein_coding
ENST00000392561 (RBM19-002) 113822054-113966310 protein_coding
ENST00000545145 (RBM19-003) 113816742-113966306 protein_coding
ENST00000546876 (RBM19-004) 113957863-113966209 processed_transcript
ENST00000552384 (RBM19-006) 113822687-113858904 nonsense_mediated_decay
ENST00000552386 (RBM19-005) 113914969-113927431 retained_intron
ENST00000553232 (RBM19-007) 113816738-113818179 processed_transcript
ENSG00000249550 (LINC01234)
long intergenic non-protein coding RNA 1234 		ENST00000510694 (LINC01234-001) 113751014-113773639 lincRNA
ENST00000547963 (LINC01234-002) 113744577-113773683 lincRNA
ENST00000550223 (LINC01234-005) 113745704-113773663 lincRNA
ENST00000550905 (LINC01234-006) 113679459-113773681 lincRNA
ENST00000551982 (LINC01234-004) 113737448-113767209 lincRNA
ENSG00000257231 (DYNLL1P4)
dynein, light chain, LC8-type 1 pseudogene 4 		ENST00000549314 (DYNLL1P4-001) 113789542-113789807 processed_pseudogene
ENSG00000257915 (GLULP5)
glutamate-ammonia ligase (glutamine synthetase) pseudogene 5 		ENST00000547831 (GLULP5-001) 114104542-114105931 processed_pseudogene
CIL_000875_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm144 VISTA 10090 5:119835778-120436934
GeneTranscriptPositionBiotype
ENSMUSG00000018263 (Tbx5)
T-box 5 		ENSMUST00000018407 (Tbx5-201) 119834663-119885218 protein_coding
ENSMUSG00000029594 (Rbm19)
RNA binding motif protein 19 		ENSMUST00000031590 (Rbm19-201) 120116510-120197979 protein_coding
ENSMUSG00000029595 (Lhx5)
LIM homeobox protein 5 		ENSMUST00000031591 (Lhx5-001) 120431770-120441223 protein_coding
ENSMUSG00000097368 (Gm10390)
predicted gene 10390 		ENSMUST00000180812 (Gm10390-201) 120121103-120139261 lincRNA
ENSMUST00000181905 (Gm10390-202) 120131485-120139263 lincRNA
ENSMUSG00000098649 (Gm27199)
predicted gene 27199 		ENSMUST00000185026 (Gm27199-001) 120419659-120431741 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000875_0001ENSG00000122965ENST00000261741ENST00000392561ENST00000545145ENST00000546876ENST00000552384ENST00000552386ENST00000553232ENSG00000249550ENST00000510694ENST00000547963ENST00000550223ENST00000550905ENST00000551982ENSG00000257231ENST00000549314ENSG00000257915ENST00000547831CIL_000875_0002ENSMUSG00000018263ENSMUST00000018407ENSMUSG00000029594ENSMUST00000031590ENSMUSG00000029595ENSMUST00000031591ENSMUSG00000097368ENSMUST00000180812ENSMUST00000181905ENSMUSG00000098649ENSMUST00000185026
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000875_0001ENSG00000122965ENST00000261741ENST00000392561ENST00000545145ENST00000552384ENST00000553232ENSG00000249550ENST00000510694ENST00000547963ENST00000550223ENST00000550905ENSG00000257231ENST00000549314ENSG00000257915ENST00000547831CIL_000875_0002ENSMUSG00000018263ENSMUST00000018407ENSMUSG00000029594ENSMUST00000031590ENSMUSG00000029595ENSMUST00000031591ENSMUSG00000097368ENSMUST00000180812ENSMUST00000181905ENSMUSG00000098649ENSMUST00000185026
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122965 ENST00000261741 2.596±0.00 3.687±0.00 1.465±0.00 1.107±0.04 1.833±0.15 2.806±0.01 1.115±0.51 1.657±1.29 1.343±0.00 3.509±0.82 3.560±0.00 2.695±1.16 3.504±1.49 2.102±0.95
ENST00000392561 2.316±0.00 1.874±0.00 0.615±0.00 1.778±0.00 0.889±0.00 2.875±0.00 1.293±1.03 0.522±0.00 2.236±0.00 N/A 8.596±0.00 3.138±0.00 2.614±0.51 2.944±0.43
ENST00000545145 1.287±0.00 4.018±0.00 N/A 1.322±0.59 2.445±0.00 N/A 0.661±0.49 2.026±0.00 0.562±0.04 1.837±0.00 N/A 2.171±0.93 0.579±0.00 1.582±0.30
ENST00000546876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.149±0.00 21.708±0.00 11.451±0.00 17.155±0.00
ENST00000552386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.673±0.00 6.500±0.00 N/A N/A
ENSG00000249550 ENST00000510694 0.095±0.00 0.215±0.00 N/A N/A 0.020±0.00 N/A 0.046±0.00 0.127±0.00 0.043±0.00 0.080±0.00 N/A 0.138±0.13 N/A 0.187±0.00
ENST00000547963 0.019±0.00 0.044±0.00 N/A 0.355±0.04 0.032±0.00 0.029±0.00 0.006±0.00 N/A N/A N/A N/A 0.011±0.00 0.036±0.02 N/A
ENST00000550223 N/A N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A 0.846±0.00 0.052±0.00 N/A
ENST00000550905 0.084±0.00 0.120±0.00 N/A N/A N/A 0.029±0.00 0.081±0.00 N/A N/A 0.141±0.00 0.076±0.00 N/A 0.087±0.00 N/A
ENST00000551982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257231 ENST00000549314 N/A 1.030±0.00 N/A 0.057±0.00 N/A N/A 0.105±0.00 N/A N/A N/A 0.358±0.00 N/A N/A N/A
ENSG00000257915 ENST00000547831 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018263 ENSMUST00000018407 0.245±0.20 0.208±0.08 1.759±0.07 0.028±0.00 0.595±0.30 0.022±0.01 5.500±2.16 0.026±0.01 0.016±0.02 7.312±2.92 0.016±0.01 0.024±0.01 0.399±0.30 1.291±0.09
ENSMUSG00000029594 ENSMUST00000031590 N/A 1.657±0.00 N/A 4.758±0.00 0.561±0.00 N/A 0.414±0.00 N/A 1.814±0.00 N/A 1.440±0.00 3.477±2.05 4.498±0.00 3.354±1.47
ENSMUSG00000029595 ENSMUST00000031591 0.024±0.01 0.019±0.01 0.009±0.01 5.485±4.28 0.058±0.05 0.013±0.00 0.017±0.00 0.018±0.01 0.022±0.02 0.016±0.01 0.024±0.00 0.071±0.04 0.036±0.02 0.113±0.09
ENSMUSG00000097368 ENSMUST00000180812 N/A N/A N/A 0.624±0.00 0.071±0.00 N/A N/A N/A N/A N/A N/A 1.785±0.00 1.458±0.79 0.715±0.00
ENSMUST00000181905 N/A 0.190±0.00 N/A N/A N/A N/A 0.229±0.00 N/A N/A N/A 0.549±0.09 N/A N/A N/A
ENSMUSG00000098649 ENSMUST00000185026 N/A N/A N/A 7.657±5.57 N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A

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