C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCZ1 vacuolar protein trafficking and biogenesis associated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031621 Ccz1-201 ENSMUSG00000029617 10090 - 5:143987916-144014853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031621
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031621 8.053±2.19 5.509±5.18 14.805±1.41 18.137±3.74 4.206±2.66 3.426±1.29 4.404±1.54 5.701±2.17 10.391±6.89 5.808±1.69 16.924±0.79 8.531±10.83 27.652±6.29 16.920±8.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VA CIL_0002VA_0002 CGP 5:143933035-144014853
CIL_00057W CIL_00057W_0002 CGP 5:143987916-144026670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005764 IEA lysosome
GO:0008150 ND biological_process
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295898 C4orf36-001 protein_coding Homo_sapiens 3e-22 110
ENST00000316731 CCZ1B-001 protein_coding Homo_sapiens 0 1929
ENST00000325974 CCZ1-001 protein_coding Homo_sapiens 0 1923
ENST00000453589 AC004967.7-001 unprocessed_pseudogene Homo_sapiens 0 451
ENST00000461592 CCZ1-004 retained_intron Homo_sapiens 2e-37 159
ENST00000462378 CCZ1B-009 retained_intron Homo_sapiens 0 226
ENST00000464543 CCZ1B-002 retained_intron Homo_sapiens 0 425
ENST00000467004 CCZ1B-003 retained_intron Homo_sapiens 0 667
ENST00000468078 CCZ1B-010 retained_intron Homo_sapiens 0 394
ENST00000472464 CCZ1B-011 processed_transcript Homo_sapiens 0 372
ENST00000474507 CCZ1-002 retained_intron Homo_sapiens 0 667
ENST00000478672 CCZ1-003 retained_intron Homo_sapiens 0 425
ENST00000481830 CCZ1B-012 processed_transcript Homo_sapiens 2e-26 122
ENST00000483394 CCZ1-005 retained_intron Homo_sapiens 0 442
ENST00000485620 CCZ1B-007 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000485920 RSPH10B2-002 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000486840 CCZ1B-004 retained_intron Homo_sapiens 2e-37 159
ENST00000490178 CCZ1B-006 retained_intron Homo_sapiens 0 448
ENST00000496187 CCZ1B-005 retained_intron Homo_sapiens 0 472
ENST00000496860 CCZ1-006 processed_transcript Homo_sapiens 1.00053e-42 176
ENST00000512654 RP11-397E7.2-001 processed_pseudogene Homo_sapiens 0 385
ENST00000539903 RSPH10B-202 protein_coding Homo_sapiens 0 224

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