C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin-like 6B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031725 Actl6b-007 ENSMUSG00000029712 10090 + 5:137553557-137569557 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLungOvaryPlacentaENSMUST00000031725
Transcript ID Adipose Breast Colon Kidney Lung Ovary Placenta
ENSMUST00000031725 0.023±0.00 0.026±0.00 0.199±0.00 0.036±0.01 0.023±0.00 0.041±0.02 0.029±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006333 IC chromatin assembly or disassembly
GO:0016514 IDA SWI/SNF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148532 actl6b-001 protein_coding Danio_rerio 0 712
ENSDART00000114640 actl6b-201 protein_coding Danio_rerio 0 486
ENST00000160382 ACTL6B-001 protein_coding Homo_sapiens 0 1844
ENST00000461605 ACTL6B-002 protein_coding Homo_sapiens 0 560
ENST00000485601 ACTL6B-004 retained_intron Homo_sapiens 0 1120
ENST00000487125 ACTL6B-006 retained_intron Homo_sapiens 0 501
ENST00000487225 ACTL6B-003 retained_intron Homo_sapiens 0 693
ENST00000489904 ACTL6B-005 retained_intron Homo_sapiens 0 374

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