C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin-like 6B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000160382 ACTL6B-001 ENSG00000077080 9606 - 7:100643097-100656461 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryTestisENST00000160382
Transcript ID Brain Colon Ovary Testis
ENST00000160382 18.250±8.85 0.173±0.00 0.054±0.00 0.097±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 NAS transcription coactivator activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006325 NAS chromatin organization
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0016514 ISS SWI/SNF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139395 Actl6b-001 protein_coding Mus_musculus 0 1954
ENSMUST00000031725 Actl6b-007 nonsense_mediated_decay Mus_musculus 0 1844
ENSDART00000148532 actl6b-001 protein_coding Danio_rerio 0 872
ENSDART00000114640 actl6b-201 protein_coding Danio_rerio 0 630
ENSMUST00000136088 Actl6b-002 protein_coding Mus_musculus 0 595
ENSMUST00000136565 Actl6b-004 protein_coding Mus_musculus 0 560
ENSMUST00000149292 Actl6b-005 protein_coding Mus_musculus 0 403
ENSMUST00000125489 Actl6b-006 protein_coding Mus_musculus 0 346
ENSMUST00000145500 Actl6b-003 retained_intron Mus_musculus 0 298

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