C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: insulin-like growth factor 2 mRNA binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031838 Igf2bp3-201 ENSMUSG00000029814 10090 - 6:49085221-49214954 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverOvaryPlacentaTestisENSMUST00000031838
Transcript ID Bladder Brain Breast Liver Ovary Placenta Testis
ENSMUST00000031838 1.348±0.00 5.151±3.77 0.227±0.00 7.372±0.58 0.550±0.13 10.169±3.82 4.370±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059M CIL_00059M_0002 CGP 6:49036518-49086751
CIL_0003DP CIL_0003DP_0002 CGP 6:49073795-49214954
CIL_00022J CIL_00022J_0002 CGP 6:49085221-49264052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006417 IEA regulation of translation
GO:0044822 IEA poly(A) RNA binding
GO:0048027 IEA mRNA 5'-UTR binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000087726 igf2bp1-001 protein_coding Danio_rerio 0 305
ENST00000258729 IGF2BP3-001 protein_coding Homo_sapiens 0 3223
ENST00000341855 RP11-760D2.10-001 processed_pseudogene Homo_sapiens 0 987
ENST00000421467 IGF2BP3-004 nonsense_mediated_decay Homo_sapiens 0 1321
ENST00000454907 RP3-497J21.1-001 processed_pseudogene Homo_sapiens 0 2128
ENST00000465058 IGF2BP3-008 processed_transcript Homo_sapiens 0 339
ENST00000466809 IGF2BP3-007 processed_transcript Homo_sapiens 0 610
ENST00000467592 IGF2BP3-013 retained_intron Homo_sapiens 0 361
ENST00000468005 IGF2BP3-005 retained_intron Homo_sapiens 0 422
ENST00000468263 IGF2BP3-003 processed_transcript Homo_sapiens 0 725
ENST00000469723 IGF2BP3-006 processed_transcript Homo_sapiens 0 305
ENST00000474105 IGF2BP3-010 processed_transcript Homo_sapiens 0 291
ENST00000476938 IGF2BP3-017 retained_intron Homo_sapiens 0 473
ENST00000479504 IGF2BP3-009 processed_transcript Homo_sapiens 0 460
ENST00000480547 IGF2BP3-012 retained_intron Homo_sapiens 0 730
ENST00000491719 IGF2BP3-002 processed_transcript Homo_sapiens 0 403
ENST00000492771 IGF2BP3-011 processed_transcript Homo_sapiens 0 603
ENST00000495009 IGF2BP3-015 retained_intron Homo_sapiens 0 503
ENST00000497563 IGF2BP3-014 processed_transcript Homo_sapiens 0 682
ENST00000498363 IGF2BP3-016 retained_intron Homo_sapiens 0 643
ENST00000619562 IGF2BP3-201 protein_coding Homo_sapiens 0 1650

Loading