C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: insulin-like growth factor 2 mRNA binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000619562 IGF2BP3-201 ENSG00000136231 9606 - 7:23311127-23347704 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000619562
Transcript ID Breast
ENST00000619562 0.189±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059M CIL_00059M_0001 CGP 7:23235967-23311729
CIL_0003DP CIL_0003DP_0001 CGP 7:23298739-23470467
CIL_00022J CIL_00022J_0001 CGP 7:23310209-23532041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0009653 TAS anatomical structure morphogenesis
GO:0010467 TAS gene expression
GO:0017148 ISS negative regulation of translation
GO:0042035 IC regulation of cytokine biosynthetic process
GO:0044822 IDA poly(A) RNA binding
GO:0045182 ISS translation regulator activity
GO:0048027 IDA mRNA 5'-UTR binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031838 Igf2bp3-201 protein_coding Mus_musculus 0 1650
ENSMUST00000128616 Malsu1-001 protein_coding Mus_musculus 4e-36 158
ENSMUST00000114500 Malsu1-002 protein_coding Mus_musculus 3e-36 158

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