C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00059M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136235-ENSG00000156928 CGP 9606 7:23235967-23311729
GeneTranscriptPositionBiotype
ENSG00000136231 (IGF2BP3)
insulin-like growth factor 2 mRNA binding protein 3 		ENST00000258729 (IGF2BP3-001) 23310209-23470467 protein_coding
ENST00000421467 (IGF2BP3-004) 23311241-23470455 nonsense_mediated_decay
ENST00000465058 (IGF2BP3-008) 23351444-23431303 processed_transcript
ENST00000466809 (IGF2BP3-007) 23347724-23431298 processed_transcript
ENST00000467592 (IGF2BP3-013) 23317693-23347812 retained_intron
ENST00000468005 (IGF2BP3-005) 23413244-23470360 retained_intron
ENST00000468263 (IGF2BP3-003) 23347631-23467926 processed_transcript
ENST00000469723 (IGF2BP3-006) 23351480-23431303 processed_transcript
ENST00000474105 (IGF2BP3-010) 23351506-23402710 processed_transcript
ENST00000476938 (IGF2BP3-017) 23361341-23470016 retained_intron
ENST00000479504 (IGF2BP3-009) 23347699-23431296 processed_transcript
ENST00000480547 (IGF2BP3-012) 23342066-23347812 retained_intron
ENST00000491719 (IGF2BP3-002) 23351387-23469502 processed_transcript
ENST00000492771 (IGF2BP3-011) 23347663-23394677 processed_transcript
ENST00000495009 (IGF2BP3-015) 23342096-23346161 retained_intron
ENST00000497563 (IGF2BP3-014) 23319138-23347803 processed_transcript
ENST00000498363 (IGF2BP3-016) 23312373-23317833 retained_intron
ENST00000619562 (IGF2BP3-201) 23311127-23347704 protein_coding
ENSG00000136235 (GPNMB)
glycoprotein (transmembrane) nmb 		ENST00000258733 (GPNMB-001) 23246563-23275108 protein_coding
ENST00000381990 (GPNMB-002) 23246697-23275107 protein_coding
ENST00000409458 (GPNMB-007) 23246709-23258048 protein_coding
ENST00000459927 (GPNMB-003) 23246766-23253367 processed_transcript
ENST00000463011 (GPNMB-009) 23273081-23274252 processed_transcript
ENST00000465673 (GPNMB-013) 23235967-23260053 processed_transcript
ENST00000468723 (GPNMB-011) 23273293-23274550 retained_intron
ENST00000470994 (GPNMB-012) 23270043-23273925 processed_transcript
ENST00000474157 (GPNMB-004) 23246774-23247367 processed_transcript
ENST00000478451 (GPNMB-010) 23273269-23274729 processed_transcript
ENST00000479625 (GPNMB-008) 23266140-23270175 retained_intron
ENST00000487890 (GPNMB-006) 23246768-23256910 processed_transcript
ENST00000492512 (GPNMB-005) 23250713-23254312 retained_intron
ENST00000492858 (GPNMB-014) 23236008-23257043 processed_transcript
ENSG00000156928 (MALSU1)
mitochondrial assembly of ribosomal large subunit 1 		ENST00000287543 (MALSU1-005) 23299339-23307990 retained_intron
ENST00000466681 (MALSU1-001) 23299200-23311729 protein_coding
ENST00000476623 (MALSU1-004) 23307691-23309575 retained_intron
ENST00000479974 (MALSU1-002) 23298739-23300924 processed_transcript
ENST00000481564 (MALSU1-003) 23299341-23301195 retained_intron
CIL_00059M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029816-ENSMUSG00000029815 CGP 10090 6:49036518-49086751
GeneTranscriptPositionBiotype
ENSMUSG00000029814 (Igf2bp3)
insulin-like growth factor 2 mRNA binding protein 3 		ENSMUST00000031838 (Igf2bp3-201) 49085221-49214954 protein_coding
ENSMUSG00000029815 (Malsu1)
mitochondrial assembly of ribosomal large subunit 1 		ENSMUST00000031839 (Malsu1-201) 49073795-49084717 protein_coding
ENSMUST00000114500 (Malsu1-002) 49073848-49086751 protein_coding
ENSMUST00000128616 (Malsu1-001) 49073795-49086751 protein_coding
ENSMUST00000139726 (Malsu1-003) 49082585-49084678 processed_transcript
ENSMUSG00000029816 (Gpnmb)
glycoprotein (transmembrane) nmb 		ENSMUST00000031840 (Gpnmb-201) 49036518-49058182 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00059M_0001ENSG00000136231ENST00000258729ENST00000421467ENST00000465058ENST00000466809ENST00000467592ENST00000468005ENST00000468263ENST00000469723ENST00000474105ENST00000476938ENST00000479504ENST00000480547ENST00000491719ENST00000492771ENST00000495009ENST00000497563ENST00000498363ENST00000619562ENSG00000136235ENST00000258733ENST00000381990ENST00000409458ENST00000459927ENST00000463011ENST00000465673ENST00000468723ENST00000470994ENST00000474157ENST00000478451ENST00000479625ENST00000487890ENST00000492512ENST00000492858ENSG00000156928ENST00000287543ENST00000466681ENST00000476623ENST00000479974ENST00000481564CIL_00059M_0002ENSMUSG00000029814ENSMUST00000031838ENSMUSG00000029815ENSMUST00000031839ENSMUST00000114500ENSMUST00000128616ENSMUST00000139726ENSMUSG00000029816ENSMUST00000031840
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00059M_0001ENSG00000136231ENST00000258729ENST00000479504ENST00000619562ENSG00000136235ENST00000258733ENST00000381990ENST00000409458ENST00000468723ENST00000478451ENSG00000156928ENST00000287543ENST00000466681ENST00000476623ENST00000481564CIL_00059M_0002ENSMUSG00000029814ENSMUST00000031838ENSMUSG00000029815ENSMUST00000031839ENSMUST00000128616ENSMUST00000139726ENSMUSG00000029816ENSMUST00000031840
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136231 ENST00000258729 N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A 4.668±2.63 10.436±5.66 2.006±1.22
ENST00000421467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479504 N/A N/A N/A N/A N/A 1.570±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619562 N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136235 ENST00000258733 12.226±0.00 6.033±0.00 1.294±0.00 2.135±0.00 16.249±0.00 7.397±4.04 5.545±0.00 1.511±0.00 6.239±5.56 24.727±0.00 2.291±1.12 22.232±12.98 29.481±0.00 N/A
ENST00000381990 40.235±0.00 20.513±0.00 2.692±0.00 3.629±2.51 29.603±10.51 30.088±28.78 37.872±21.95 4.108±2.53 7.562±4.12 22.592±4.81 6.518±0.00 19.282±9.35 26.359±11.29 19.193±13.41
ENST00000409458 N/A N/A N/A 0.653±0.00 N/A N/A 2.965±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000459927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468723 N/A N/A N/A 1.878±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.947±0.00
ENST00000479625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000156928 ENST00000287543 18.134±0.00 20.389±0.00 0.471±0.00 11.771±8.39 10.486±9.40 14.514±0.00 17.213±11.75 9.682±6.79 23.876±0.00 14.177±0.00 26.759±2.06 29.437±6.31 30.695±0.00 29.265±3.66
ENST00000466681 N/A N/A 0.125±0.00 0.271±0.00 N/A 0.313±0.00 N/A N/A N/A N/A N/A 0.560±0.00 N/A N/A
ENST00000476623 7.603±0.00 11.859±0.00 N/A 6.799±4.26 8.020±0.00 3.950±2.09 6.380±4.18 6.824±3.28 11.469±0.00 4.272±0.77 10.666±0.00 18.438±0.00 N/A 10.248±0.00
ENST00000479974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481564 N/A N/A 0.435±0.00 N/A 1.862±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029814 ENSMUST00000031838 N/A N/A 1.348±0.00 5.151±3.77 0.227±0.00 N/A N/A N/A 7.372±0.58 N/A N/A 0.550±0.13 10.169±3.82 4.370±0.76
ENSMUSG00000029815 ENSMUST00000031839 23.997±1.15 51.180±12.06 27.558±0.00 23.464±6.76 36.105±17.07 26.956±2.10 16.059±1.08 25.667±7.81 19.606±5.82 20.720±2.85 38.516±1.98 42.034±8.95 37.528±18.82 50.985±0.00
ENSMUST00000114500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128616 N/A N/A N/A N/A 0.381±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.329±0.00 N/A N/A
ENSMUSG00000029816 ENSMUST00000031840 6.099±1.50 0.313±0.05 13.760±2.81 0.265±0.11 5.205±1.35 1.257±0.28 0.806±0.37 0.374±0.10 0.115±0.07 8.584±0.93 0.364±0.13 9.667±4.01 5.901±4.28 1.213±1.32

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