C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032159 Cntn3-201 ENSMUSG00000030075 10090 - 6:102163306-102464667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000032159
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000032159 0.038±0.00 0.067±0.03 1.913±1.54 0.105±0.05 0.020±0.01 0.030±0.01 0.399±0.18 0.004±0.00 0.173±0.17 0.040±0.02 0.142±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LH CIL_0008LH_0002 VISTA 6:101636781-102239346

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007399 IEA nervous system development
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000007545 cntn4-201 protein_coding Danio_rerio 2e-36 159
ENSDART00000127425 cntn4-203 protein_coding Danio_rerio 2e-36 159
ENST00000263665 CNTN3-001 protein_coding Homo_sapiens 0 3984
ENST00000477856 CNTN3-002 processed_transcript Homo_sapiens 0 496

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