C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032264 Gabarapl1-201 ENSMUSG00000030161 10090 + 6:129533200-129542331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032264
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032264 62.178±7.18 75.519±4.65 53.180±0.45 71.135±16.83 38.436±1.76 29.762±3.88 28.967±3.88 387.237±23.89 105.668±86.94 62.364±6.75 25.899±4.02 57.809±19.00 44.746±28.85 52.592±24.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000T9 CIL_0000T9_0002 CGP 6:129512557-129542331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005776 ISA autophagic vacuole
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005874 IEA microtubule
GO:0006914 IEA autophagy
GO:0008092 ISA cytoskeletal protein binding
GO:0031410 IEA cytoplasmic vesicle
GO:0032590 IEA dendrite membrane
GO:0032839 IEA dendrite cytoplasm
GO:0044297 IEA cell body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266458 GABARAPL1-001 protein_coding Homo_sapiens 0 695
ENST00000412799 GABARAPL3-001 processed_pseudogene Homo_sapiens 0 438
ENST00000421801 GABARAPL1-002 protein_coding Homo_sapiens 0 433
ENST00000535576 GABARAPL1-014 protein_coding Homo_sapiens 0 407
ENST00000539170 GABARAPL1-005 protein_coding Homo_sapiens 0 575
ENST00000539289 GABARAPL1-019 processed_transcript Homo_sapiens 0 252
ENST00000540424 GABARAPL1-003 nonsense_mediated_decay Homo_sapiens 0 571
ENST00000541453 GABARAPL1-012 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000541960 GABARAPL1-020 nonsense_mediated_decay Homo_sapiens 0 571
ENST00000542722 GABARAPL1-017 nonsense_mediated_decay Homo_sapiens 0 569
ENST00000543602 GABARAPL1-018 protein_coding Homo_sapiens 0 431
ENST00000544284 GABARAPL1-008 protein_coding Homo_sapiens 0 590
ENST00000545047 GABARAPL1-021 protein_coding Homo_sapiens 0 211
ENST00000545290 GABARAPL1-015 protein_coding Homo_sapiens 0 320
ENST00000545859 GABARAPL1-011 protein_coding Homo_sapiens 0 294
ENST00000545887 GABARAPL1-013 protein_coding Homo_sapiens 0 628
ENST00000546017 GABARAPL1-004 protein_coding Homo_sapiens 0 571

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