C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NECAP endocytosis associated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032477 Necap1-201 ENSMUSG00000030327 10090 + 6:122874557-122888934 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032477 11.539±1.36 13.648±0.98 13.091±2.71 23.997±6.48 9.129±2.22 9.246±1.43 7.808±0.27 11.880±1.16 14.416±1.51 10.919±0.50 4.788±0.39 9.246±2.83 23.111±11.15 4.642±2.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001J CIL_00001J_0002 CGP 6:122847138-122888934
CIL_00001K CIL_00001K_0002 CGP 6:122874557-122934619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005905 IDA coated pit
GO:0006897 IMP endocytosis
GO:0015031 IEA protein transport
GO:0030125 IDA clathrin vesicle coat

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320802 NECAP1P1-001 processed_pseudogene Homo_sapiens 0 856
ENST00000339754 NECAP1-001 protein_coding Homo_sapiens 0 1151
ENST00000450991 NECAP1-003 nonsense_mediated_decay Homo_sapiens 0 632
ENST00000537796 NECAP1-004 retained_intron Homo_sapiens 0 566
ENST00000540083 NECAP1-010 protein_coding Homo_sapiens 0 852
ENST00000541948 NECAP1-009 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000542095 NECAP1-006 retained_intron Homo_sapiens 0 529
ENST00000544891 NECAP1-008 retained_intron Homo_sapiens 0 414
ENST00000545807 NECAP1-007 retained_intron Homo_sapiens 0 370

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