C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00001K_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000089818-ENSG00000111729 CGP 9606 12:8082211-8138607
GeneTranscriptPositionBiotype
ENSG00000089818 (NECAP1)
NECAP endocytosis associated 1 		ENST00000339754 (NECAP1-001) 8082211-8097771 protein_coding
ENST00000450991 (NECAP1-003) 8082268-8097769 nonsense_mediated_decay
ENST00000537796 (NECAP1-004) 8091760-8097771 retained_intron
ENST00000540083 (NECAP1-010) 8082787-8095700 protein_coding
ENST00000541948 (NECAP1-009) 8082282-8095690 nonsense_mediated_decay
ENST00000542095 (NECAP1-006) 8082255-8091984 retained_intron
ENST00000544891 (NECAP1-008) 8082270-8090606 retained_intron
ENST00000545807 (NECAP1-007) 8082268-8092771 retained_intron
ENST00000546181 (NECAP1-005) 8082228-8090400 retained_intron
ENSG00000111729 (CLEC4A)
C-type lectin domain family 4, member A 		ENST00000229332 (CLEC4A-001) 8123632-8138607 protein_coding
ENST00000345999 (CLEC4A-004) 8123853-8138604 protein_coding
ENST00000352620 (CLEC4A-002) 8123879-8138287 protein_coding
ENST00000360500 (CLEC4A-005) 8123879-8138287 protein_coding
ENST00000546339 (CLEC4A-003) 8123912-8138206 protein_coding
ENSG00000235602 (POU5F1P3)
POU class 5 homeobox 1 pseudogene 3 		ENST00000428824 (POU5F1P3-001) 8133772-8134849 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00001K_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030327-ENSMUSG00000049037 CGP 10090 6:122874557-122934619
GeneTranscriptPositionBiotype
ENSMUSG00000030327 (Necap1)
NECAP endocytosis associated 1 		ENSMUST00000032477 (Necap1-201) 122874557-122888934 protein_coding
ENSMUSG00000049037 (Clec4a1)
C-type lectin domain family 4, member a1 		ENSMUST00000060484 (Clec4a1-001) 122921848-122934619 protein_coding
ENSMUSG00000049249 (Gm5316)
predicted gene 5316 		ENSMUST00000050391 (Gm5316-001) 122900136-122900405 transcribed_processed_pseudogene
ENSMUST00000185734 (Gm5316-002) 122899721-122902816 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00001K_0001ENSG00000089818ENST00000339754ENST00000450991ENST00000537796ENST00000540083ENST00000541948ENST00000542095ENST00000544891ENST00000545807ENST00000546181ENSG00000111729ENST00000229332ENST00000345999ENST00000352620ENST00000360500ENST00000546339ENSG00000235602ENST00000428824CIL_00001K_0002ENSMUSG00000030327ENSMUST00000032477ENSMUSG00000049037ENSMUST00000060484ENSMUSG00000049249ENSMUST00000050391ENSMUST00000185734
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00001K_0001ENSG00000089818ENST00000339754ENST00000450991ENST00000537796ENST00000545807ENSG00000111729ENST00000229332ENST00000345999ENST00000352620ENSG00000235602ENST00000428824CIL_00001K_0002ENSMUSG00000030327ENSMUST00000032477ENSMUSG00000049037ENSMUST00000060484ENSMUSG00000049249ENSMUST00000050391ENSMUST00000185734
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089818 ENST00000339754 5.431±0.00 6.062±0.00 N/A 35.234±0.88 2.900±0.61 2.907±1.54 3.198±1.19 10.075±0.00 4.328±1.12 5.186±1.10 3.290±0.00 8.823±2.17 7.248±1.20 8.339±1.75
ENST00000450991 N/A N/A N/A N/A 1.106±0.10 1.201±0.00 N/A 2.924±0.00 N/A 0.915±0.00 N/A 4.683±0.00 1.180±0.00 1.541±0.00
ENST00000537796 N/A 1.668±0.00 N/A N/A N/A N/A N/A N/A N/A 1.408±0.39 N/A 1.959±0.82 N/A N/A
ENST00000540083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.445±0.00 N/A N/A N/A
ENST00000546181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000111729 ENST00000229332 N/A N/A N/A N/A N/A N/A N/A N/A 0.311±0.00 1.034±0.11 N/A 1.152±0.00 1.368±0.26 1.113±0.00
ENST00000345999 1.383±0.00 3.300±0.00 N/A N/A 2.218±0.00 N/A N/A 0.729±0.00 N/A 4.254±0.00 N/A 2.030±0.92 1.404±0.12 N/A
ENST00000352620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.422±0.00 1.017±0.00 2.095±0.00 N/A
ENST00000360500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235602 ENST00000428824 0.214±0.00 0.349±0.00 N/A 0.056±0.00 0.337±0.00 N/A N/A 0.102±0.00 0.045±0.00 0.420±0.25 N/A 0.132±0.07 0.033±0.00 0.046±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030327 ENSMUST00000032477 11.539±1.36 13.648±0.98 13.091±2.71 23.997±6.48 9.129±2.22 9.246±1.43 7.808±0.27 11.880±1.16 14.416±1.51 10.919±0.50 4.788±0.39 9.246±2.83 23.111±11.15 4.642±2.39
ENSMUSG00000049037 ENSMUST00000060484 4.325±0.55 0.393±0.10 4.762±0.28 0.191±0.11 5.309±1.81 1.080±0.14 1.255±0.40 0.621±0.11 1.938±1.57 2.321±0.21 0.287±0.13 1.424±0.79 0.761±0.69 0.272±0.16
ENSMUSG00000049249 ENSMUST00000050391 N/A N/A 0.177±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A
ENSMUST00000185734 0.049±0.05 0.119±0.06 0.018±0.00 0.018±0.01 0.059±0.04 0.060±0.02 0.029±0.02 0.049±0.02 0.021±0.00 0.043±0.02 N/A 0.092±0.06 0.016±0.01 0.315±0.30

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