C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcitonin/calcitonin-related polypeptide, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032906 Calca-201 ENSMUSG00000030669 10090 - 7:114631480-114636357 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000032906
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000032906 0.326±0.12 0.165±0.05 0.047±0.02 1.187±0.66 0.321±0.12 0.027±0.01 1.123±0.19 0.032±0.03 0.345±0.23 0.484±0.25 0.027±0.00 0.317±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QZ CIL_0007QZ_0002 VISTA 7:114596548-115197751

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001976 ISA neurological system process involved in regulation of systemic arterial blood pressure
GO:0001984 IMP vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure
GO:0002027 IMP regulation of heart rate
GO:0005102 IDA receptor binding
GO:0005179 IEA hormone activity
GO:0005576 TAS extracellular region
GO:0005615 ISO extracellular space
GO:0005622 IDA intracellular
GO:0005737 IDA cytoplasm
GO:0006874 IGI cellular calcium ion homeostasis
GO:0006954 IDA inflammatory response
GO:0007189 IGI adenylate cyclase-activating G-protein coupled receptor signaling pathway
GO:0007190 ISA activation of adenylate cyclase activity
GO:0007218 IDA neuropeptide signaling pathway
GO:0007631 IDA feeding behavior
GO:0009408 IMP response to heat
GO:0030279 IMP negative regulation of ossification
GO:0030424 IDA axon
GO:0031645 IMP negative regulation of neurological system process
GO:0031716 IDA calcitonin receptor binding
GO:0043005 IDA neuron projection
GO:0043025 IDA neuronal cell body
GO:0043195 IDA terminal bouton
GO:0045776 IMP negative regulation of blood pressure
GO:0045778 IMP positive regulation of ossification
GO:0045986 IDA negative regulation of smooth muscle contraction
GO:0048240 ISA sperm capacitation
GO:0048265 IMP response to pain
GO:0050965 IMP detection of temperature stimulus involved in sensory perception of pain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324229 CALCB-002 protein_coding Homo_sapiens 0 351
ENST00000331587 CALCA-001 protein_coding Homo_sapiens 0 200
ENST00000361010 CALCA-201 protein_coding Homo_sapiens 0 531
ENST00000396372 CALCA-003 protein_coding Homo_sapiens 0 195
ENST00000469608 CALCA-002 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000486207 CALCA-004 protein_coding Homo_sapiens 0 531
ENST00000494746 CALCA-005 retained_intron Homo_sapiens 3e-20 104
ENST00000522108 CALCP-001 unprocessed_pseudogene Homo_sapiens 4.00001e-40 167
ENST00000523376 CALCB-001 protein_coding Homo_sapiens 0 351
ENST00000533448 CALCB-003 protein_coding Homo_sapiens 0 348

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