C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 38, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033512 Slc38a5-001 ENSMUSG00000031170 10090 + X:8271381-8280179 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033512
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033512 2.267±1.63 0.061±0.00 1.049±0.17 6.606±4.26 0.032±0.02 1.315±0.23 0.170±0.05 0.005±0.00 31.511±20.87 26.309±13.47 0.104±0.00 28.693±18.14 1.575±0.82 8.827±5.99

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005886 IEA plasma membrane
GO:0015171 IEA amino acid transmembrane transporter activity
GO:0015175 IEA neutral amino acid transmembrane transporter activity
GO:0015187 IEA glycine transmembrane transporter activity
GO:0015804 IEA neutral amino acid transport
GO:0015816 IEA glycine transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000413668 SLC38A5-003 protein_coding Homo_sapiens 0 760
ENST00000416711 SLC38A5-001 protein_coding Homo_sapiens 0 665
ENST00000429543 SLC38A5-007 protein_coding Homo_sapiens 0 579
ENST00000440085 SLC38A5-004 protein_coding Homo_sapiens 0 880
ENST00000441948 SLC38A5-002 protein_coding Homo_sapiens 0 839
ENST00000488083 SLC38A5-009 protein_coding Homo_sapiens 0 579
ENST00000494034 SLC38A5-008 nonsense_mediated_decay Homo_sapiens 0 372
ENST00000497336 SLC38A5-010 processed_transcript Homo_sapiens 0 442
ENST00000595796 SLC38A5-011 protein_coding Homo_sapiens 0 1554
ENST00000615300 SLC38A5-006 retained_intron Homo_sapiens 0 560
ENST00000619100 SLC38A5-012 protein_coding Homo_sapiens 0 1445
ENST00000620913 SLC38A5-201 protein_coding Homo_sapiens 0 1554
ENST00000622196 SLC38A5-202 protein_coding Homo_sapiens 0 1434

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