C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: immunoglobulin (CD79A) binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033570 Igbp1-001 ENSMUSG00000031221 10090 + X:100494291-100516125 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033570
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033570 18.630±2.10 9.388±1.09 28.109±4.74 15.371±1.59 13.319±2.27 14.637±2.12 11.575±0.62 26.904±2.04 20.676±4.69 10.688±0.50 13.967±3.34 22.249±13.25 34.579±6.90 1.646±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RE CIL_0002RE_0002 CGP X:100429013-100516125
CIL_0002RD CIL_0002RD_0002 CGP X:100494291-100546144

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005874 IGI microtubule
GO:0008601 IEA protein phosphatase type 2A regulator activity
GO:0019904 IPI protein domain specific binding
GO:0031434 IPI mitogen-activated protein kinase kinase binding
GO:0032873 IEA negative regulation of stress-activated MAPK cascade
GO:0034612 IEA response to tumor necrosis factor
GO:0035306 IMP positive regulation of dephosphorylation
GO:0035308 IDA negative regulation of protein dephosphorylation
GO:0042113 IEA B cell activation
GO:0043154 IEA negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0060632 IEA regulation of microtubule-based movement
GO:0070555 IEA response to interleukin-1
GO:2001234 IMP negative regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342206 IGBP1-001 protein_coding Homo_sapiens 0 1164
ENST00000356413 IGBP1-002 protein_coding Homo_sapiens 0 1164
ENST00000447449 IGBP1P3-001 processed_pseudogene Homo_sapiens 0 876
ENST00000503202 IGBP1P4-001 processed_pseudogene Homo_sapiens 0 939
ENST00000507524 IGBP1P5-001 processed_pseudogene Homo_sapiens 0 730
ENST00000554337 IGBP1P1-001 processed_pseudogene Homo_sapiens 0 953
ENST00000583666 CTD-2200P10.1-001 processed_pseudogene Homo_sapiens 0 1037

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