C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysosomal-associated membrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033824 Lamp1-201 ENSMUSG00000031447 10090 + 8:13159135-13175338 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033824
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033824 263.045±45.68 251.277±30.60 231.725±35.84 69.730±16.24 248.819±28.34 264.592±63.87 195.948±32.81 600.550±43.17 228.839±100.64 340.658±42.51 150.221±28.64 343.108±112.11 250.385±83.05 245.265±103.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QK CIL_0000QK_0002 CGP 8:13105621-13175338
CIL_00058I CIL_00058I_0003 CGP 8:13159135-13200624

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 ISO cytoplasm
GO:0005764 IDA lysosome
GO:0005768 IDA endosome
GO:0005770 IDA late endosome
GO:0005771 IDA multivesicular body
GO:0005773 IEA vacuole
GO:0006914 IEA autophagy
GO:0007283 TAS spermatogenesis
GO:0008626 IEA granzyme-mediated apoptotic signaling pathway
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0019899 IEA enzyme binding
GO:0019904 IPI protein domain specific binding
GO:0030425 IEA dendrite
GO:0031410 IEA cytoplasmic vesicle
GO:0031982 IDA vesicle
GO:0042383 IDA sarcolemma
GO:0042470 IDA melanosome
GO:0043025 IEA neuronal cell body
GO:0043323 IEA positive regulation of natural killer cell degranulation
GO:0044194 IDA cytolytic granule
GO:0045954 IEA positive regulation of natural killer cell mediated cytotoxicity
GO:0048102 IEA autophagic cell death
GO:0050821 IMP protein stabilization
GO:0061474 IDA phagolysosome membrane
GO:0070062 IEA extracellular vesicular exosome
GO:0072594 IEA establishment of protein localization to organelle
GO:0090160 IEA Golgi to lysosome transport
GO:0097208 IEA alveolar lamellar body
GO:1902513 IEA regulation of organelle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332556 LAMP1-001 protein_coding Homo_sapiens 0 741
ENST00000472564 LAMP1-003 retained_intron Homo_sapiens 0 387

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