C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysosomal-associated membrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000332556 LAMP1-001 ENSG00000185896 9606 + 13:113297241-113323672 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000332556
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000332556 150.371±0.00 116.135±0.00 14.838±0.00 52.886±38.95 71.739±55.07 52.856±43.50 24.855±20.04 81.377±49.46 57.772±39.67 71.938±57.09 24.372±21.95 95.843±45.62 168.271±20.53 113.977±21.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QK CIL_0000QK_0001 CGP 13:113208193-113323672
CIL_00058I CIL_00058I_0002 CGP 13:113297241-113364148

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005764 IDA lysosome
GO:0005768 IEA endosome
GO:0005770 IDA late endosome
GO:0005771 IEA multivesicular body
GO:0005773 IEA vacuole
GO:0005887 TAS integral component of plasma membrane
GO:0006914 IEA autophagy
GO:0008626 IMP granzyme-mediated apoptotic signaling pathway
GO:0009897 IEA external side of plasma membrane
GO:0009986 IEA cell surface
GO:0016020 IDA:IEA membrane
GO:0019899 IPI enzyme binding
GO:0019904 IEA protein domain specific binding
GO:0030425 IEA dendrite
GO:0031410 IEA cytoplasmic vesicle
GO:0031982 IEA vesicle
GO:0042383 IEA sarcolemma
GO:0042470 IEA melanosome
GO:0043025 IEA neuronal cell body
GO:0043323 IMP positive regulation of natural killer cell degranulation
GO:0044194 IEA cytolytic granule
GO:0045954 IMP positive regulation of natural killer cell mediated cytotoxicity
GO:0048102 IEA autophagic cell death
GO:0050821 ISS protein stabilization
GO:0061474 IEA phagolysosome membrane
GO:0070062 IDA extracellular vesicular exosome
GO:0072594 IMP establishment of protein localization to organelle
GO:0090160 IMP Golgi to lysosome transport
GO:0097208 IEA alveolar lamellar body
GO:1902513 IMP regulation of organelle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033824 Lamp1-201 protein_coding Mus_musculus 0 741

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