C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033877 Brf2-201 ENSMUSG00000031487 10090 - 8:27123832-27128632 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033877
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033877 6.479±0.86 5.848±1.11 7.601±0.44 8.182±2.86 6.240±0.58 4.892±0.57 3.440±0.32 5.805±0.99 4.668±0.98 5.014±0.53 3.453±0.56 8.191±1.74 5.174±1.14 13.130±4.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000802 CIL_000802_0002 VISTA 8:26613996-27214881
CIL_0009C5 CIL_0009C5_0002 VISTA 8:26806327-27408431
CIL_0007QT CIL_0007QT_0002 VISTA 8:26806345-27408424
CIL_0002IX CIL_0002IX_0002 CGP 8:27085583-27128632
CIL_0003YX CIL_0003YX_0003 CGP 8:27123832-27174646

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220659 BRF2-001 protein_coding Homo_sapiens 0 1164
ENST00000520601 BRF2-005 protein_coding Homo_sapiens 0 538
ENST00000521170 BRF2-003 protein_coding Homo_sapiens 0 259
ENST00000522539 BRF2-004 nonsense_mediated_decay Homo_sapiens 0 259

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