C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033898 Col4a1-001 ENSMUSG00000031502 10090 - 8:11198423-11312826 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033898 91.873±27.58 83.111±6.80 97.571±20.14 15.413±6.13 145.601±15.06 63.130±1.86 61.149±5.05 39.153±17.68 6.848±2.49 99.739±40.18 16.273±4.27 135.802±24.96 239.179±149.54 4.078±1.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077O CIL_00077O_0002 CGP 8:10986980-11312826
CIL_00058N CIL_00058N_0003 CGP 8:11198423-11449287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001569 IEA patterning of blood vessels
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005587 IDA collagen type IV trimer
GO:0005604 IDA basement membrane
GO:0007420 IEA brain development
GO:0007528 IMP neuromuscular junction development
GO:0030855 IEA epithelial cell differentiation
GO:0031012 IDA extracellular matrix
GO:0048407 IEA platelet-derived growth factor binding
GO:0048514 IEA blood vessel morphogenesis
GO:0061304 IEA retinal blood vessel morphogenesis
GO:0061333 IEA renal tubule morphogenesis
GO:0071230 IDA cellular response to amino acid stimulus
GO:0071711 IEA basement membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375820 COL4A1-001 protein_coding Homo_sapiens 0 4922
ENST00000543140 COL4A1-005 protein_coding Homo_sapiens 0 1450

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