C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FSHD region gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033999 Frg1-201 ENSMUSG00000031590 10090 - 8:41397457-41417118 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033999
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033999 4.439±2.04 6.034±1.70 17.040±2.14 19.429±8.89 5.587±1.06 7.154±3.18 3.611±0.48 5.183±1.56 10.337±5.63 3.795±1.41 7.800±0.57 14.001±19.73 48.260±35.87 17.131±18.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QQ CIL_0001QQ_0002 CGP 8:41340197-41417118

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0007517 IEA muscle organ development
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000226798 FRG1-001 protein_coding Homo_sapiens 0 1029
ENST00000278882 FRG1B-001 protein_coding Homo_sapiens 0 852
ENST00000358464 FRG1B-201 protein_coding Homo_sapiens 0 850
ENST00000376334 RP11-764K9.4-001 unprocessed_pseudogene Homo_sapiens 0 798
ENST00000479318 FRG1B-002 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000505327 FRG1-002 processed_transcript Homo_sapiens 0 235
ENST00000507103 FRG1-003 nonsense_mediated_decay Homo_sapiens 0 235
ENST00000514482 FRG1-005 processed_transcript Homo_sapiens 0 658
ENST00000524583 FRG1-006 protein_coding Homo_sapiens 0 342
ENST00000531991 FRG1-008 protein_coding Homo_sapiens 0 619
ENST00000533157 FRG1-007 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000620886 FRG1-201 protein_coding Homo_sapiens 0 1029
ENST00000623592 ABC14-1080714F14.1-001 unprocessed_pseudogene Homo_sapiens 0 418
ENST00000624356 ABBA01031664.1-201 protein_coding Homo_sapiens 0 383

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