C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FSHD region gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000226798 FRG1-001 ENSG00000109536 9606 + 4:189940788-189963204 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000226798
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000226798 7.032±0.00 5.320±0.00 0.448±0.00 5.001±1.03 3.046±2.13 4.016±2.64 1.977±1.77 3.958±2.73 3.837±1.16 2.704±1.54 1.796±1.59 3.971±2.31 4.955±0.55 6.483±1.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0007517 IEA muscle organ development
GO:0030674 IEA protein binding, bridging
GO:0044822 IDA poly(A) RNA binding
GO:0051015 IEA actin filament binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033999 Frg1-201 protein_coding Mus_musculus 0 1029

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