C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyamine modulated factor 1 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034162 Pmfbp1-201 ENSMUSG00000031727 10090 + 8:109494027-109542642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034162
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034162 0.026±0.01 0.020±0.00 0.476±0.20 0.030±0.01 0.021±0.00 0.020±0.00 0.017±0.01 0.012±0.02 0.018±0.01 0.011±0.00 0.091±0.04 0.009±0.00 150.902±183.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FG CIL_0008FG_0002 VISTA 8:109010589-109613918
CIL_00098B CIL_00098B_0002 VISTA 8:109116597-109718209
CIL_00098E CIL_00098E_0002 VISTA 8:109136455-109737561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000237353 PMFBP1-001 protein_coding Homo_sapiens 0 2028
ENST00000355636 PMFBP1-201 protein_coding Homo_sapiens 0 1639
ENST00000379073 PMFBP1-004 nonsense_mediated_decay Homo_sapiens 0 1639
ENST00000537392 PMFBP1-005 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000537465 PMFBP1-003 protein_coding Homo_sapiens 0 1936

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