C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cilia and flagella associated protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034249 Gtl3-201 ENSMUSG00000031796 10090 - 8:95420252-95434869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034249
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034249 20.656±6.51 24.676±10.83 27.618±6.48 29.931±15.37 12.332±4.08 15.654±3.97 10.304±1.14 15.939±2.00 16.640±5.18 29.190±2.51 2.680±0.59 31.383±10.72 30.539±10.19 39.090±12.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004RX CIL_0004RX_0002 CGP 8:95352268-95434869
CIL_0004RW CIL_0004RW_0002 CGP 8:95420252-95488820

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005814 ISS centriole
GO:0005874 IEA microtubule
GO:0005929 IDA cilium
GO:0018095 ISS protein polyglutamylation
GO:0036064 ISS ciliary basal body
GO:0044822 IEA poly(A) RNA binding
GO:0060271 ISS cilium morphogenesis
GO:0060296 ISS regulation of cilium beat frequency involved in ciliary motility
GO:0070062 IEA extracellular vesicular exosome
GO:2000147 ISS positive regulation of cell motility
GO:2000253 ISS positive regulation of feeding behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262498 CFAP20-001 protein_coding Homo_sapiens 0 950
ENST00000562622 CFAP20-002 retained_intron Homo_sapiens 0 632
ENST00000564150 CFAP20-005 retained_intron Homo_sapiens 0 427
ENST00000565880 CFAP20-007 protein_coding Homo_sapiens 0 425
ENST00000567092 CFAP20-004 retained_intron Homo_sapiens 0 411
ENST00000567660 CFAP20-003 retained_intron Homo_sapiens 0 276

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