C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 27 (fatty acid transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034267 Slc27a1-201 ENSMUSG00000031808 10090 + 8:71568927-71586708 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034267 159.244±41.21 191.882±71.93 22.134±1.49 33.467±12.78 250.614±53.54 27.392±3.26 74.152±5.08 39.259±6.38 2.673±1.38 22.091±4.19 21.408±3.86 87.914±46.03 4.907±3.27 19.939±5.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051F CIL_00051F_0002 CGP 8:71560556-71586708
CIL_000769 CIL_000769_0002 CGP 8:71568927-71601092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001579 IGI medium-chain fatty acid transport
GO:0001676 TAS long-chain fatty acid metabolic process
GO:0004467 TAS long-chain fatty acid-CoA ligase activity
GO:0005783 IDA endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0006646 IEA phosphatidylethanolamine biosynthetic process
GO:0006654 IEA phosphatidic acid biosynthetic process
GO:0006655 IEA phosphatidylglycerol biosynthetic process
GO:0006656 IEA phosphatidylcholine biosynthetic process
GO:0006659 IEA phosphatidylserine biosynthetic process
GO:0006661 IEA phosphatidylinositol biosynthetic process
GO:0009409 IMP response to cold
GO:0015245 IDA fatty acid transporter activity
GO:0015908 IDA fatty acid transport
GO:0015909 IMP long-chain fatty acid transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031410 TAS cytoplasmic vesicle
GO:0031652 IMP positive regulation of heat generation
GO:0031957 IDA very long-chain fatty acid-CoA ligase activity
GO:0032049 IEA cardiolipin biosynthetic process
GO:0032868 IMP response to insulin
GO:0033211 IMP adiponectin-activated signaling pathway
GO:0042803 IDA protein homodimerization activity
GO:0071072 IEA negative regulation of phospholipid biosynthetic process
GO:0071902 IMP positive regulation of protein serine/threonine kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252595 SLC27A1-001 protein_coding Homo_sapiens 0 1941
ENST00000593701 SLC27A1-008 retained_intron Homo_sapiens 0 667
ENST00000594962 SLC27A1-007 retained_intron Homo_sapiens 0 1018
ENST00000598424 SLC27A1-002 protein_coding Homo_sapiens 0 1430
ENST00000599380 SLC27A1-004 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000599965 SLC27A1-010 protein_coding Homo_sapiens 0 418
ENST00000600277 SLC27A1-003 nonsense_mediated_decay Homo_sapiens 0 514
ENST00000600297 SLC27A1-005 nonsense_mediated_decay Homo_sapiens 0 512

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