C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24 protein transport domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034393 Tmed6-201 ENSMUSG00000031919 10090 - 8:107061484-107065644 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000034393
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000034393 1.036±0.11 0.010±0.00 0.019±0.00 3.175±0.86 0.039±0.00 30.138±1.02 1.191±0.37 0.505±0.11 0.319±0.23 0.487±0.39 34.292±21.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KB CIL_0008KB_0002 VISTA 8:107038845-107639359
CIL_0004IB CIL_0004IB_0002 CGP 8:107056877-107065644
CIL_0004I8 CIL_0004I8_0002 CGP 8:107061484-107096547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0006810 IEA transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288025 TMED6-001 protein_coding Homo_sapiens 0 595
ENST00000564737 RP11-343C2.7-001 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000570293 RP11-343C2.7-002 nonsense_mediated_decay Homo_sapiens 0 261

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