C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 26 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034470 Vps26b-201 ENSMUSG00000031988 10090 - 9:27004503-27030094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034470
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034470 14.442±3.72 26.134±2.20 4.808±0.58 11.910±6.53 14.318±7.73 13.696±4.21 6.040±0.42 9.018±1.88 5.088±2.23 16.874±2.47 3.570±1.44 27.786±13.16 2.777±3.13 2.187±1.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281187 VPS26B-001 protein_coding Homo_sapiens 0 1825
ENST00000341541 THYN1-002 protein_coding Homo_sapiens 2e-26 124
ENST00000352327 THYN1-001 protein_coding Homo_sapiens 1e-25 121
ENST00000392594 THYN1-004 protein_coding Homo_sapiens 1e-26 124
ENST00000392595 THYN1-005 protein_coding Homo_sapiens 1e-26 124
ENST00000525095 VPS26B-002 protein_coding Homo_sapiens 0 1642
ENST00000525918 VPS26B-007 retained_intron Homo_sapiens 0 416
ENST00000527586 VPS26B-004 nonsense_mediated_decay Homo_sapiens 0 496
ENST00000530402 VPS26B-005 processed_transcript Homo_sapiens 0 385
ENST00000531135 THYN1-009 retained_intron Homo_sapiens 3e-28 130
ENST00000531741 VPS26B-006 retained_intron Homo_sapiens 0 721
ENST00000532160 VPS26B-003 retained_intron Homo_sapiens 0 283
ENST00000532445 NCAPD3-007 protein_coding Homo_sapiens 0 331
ENST00000533975 THYN1-003 retained_intron Homo_sapiens 3e-28 130
ENST00000534227 NCAPD3-005 protein_coding Homo_sapiens 0 331

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