C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 26 homolog B (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000281187 VPS26B-001 ENSG00000151502 9606 + 11:134224645-134247792 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000281187
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000281187 13.657±0.00 10.764±0.00 2.030±0.00 7.078±0.00 9.888±5.27 11.529±7.99 6.446±4.66 11.252±0.00 5.039±0.00 2.417±0.00 2.232±1.29 4.517±0.00 17.894±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VG CIL_0005VG_0002 CGP 11:134224645-134253370

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005829 ISS cytosol
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034470 Vps26b-201 protein_coding Mus_musculus 0 1825
ENSDART00000022015 vps26b-001 protein_coding Danio_rerio 0 569
ENSDART00000149926 vps26b-003 nonsense_mediated_decay Danio_rerio 0 438

Loading