C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: junction adhesion molecule 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034472 Jam3-201 ENSMUSG00000031990 10090 - 9:27097385-27155421 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034472
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034472 16.721±7.32 23.776±2.04 26.111±1.24 13.529±5.47 12.113±1.35 6.401±0.93 9.809±0.53 18.347±0.74 1.164±0.48 6.327±0.74 3.617±0.77 38.448±9.54 5.565±4.09 13.269±5.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IDA angiogenesis
GO:0001780 IMP neutrophil homeostasis
GO:0002250 IMP adaptive immune response
GO:0002318 IMP myeloid progenitor cell differentiation
GO:0002523 IMP leukocyte migration involved in inflammatory response
GO:0005178 IPI integrin binding
GO:0005515 IPI protein binding
GO:0005615 ISS extracellular space
GO:0005886 IEA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005923 IDA tight junction
GO:0007155 ISA cell adhesion
GO:0007160 IDA cell-matrix adhesion
GO:0007283 IMP spermatogenesis
GO:0007286 IMP spermatid development
GO:0009986 ISA cell surface
GO:0016021 IEA integral component of membrane
GO:0016477 IDA cell migration
GO:0019226 IMP transmission of nerve impulse
GO:0030010 IDA establishment of cell polarity
GO:0030057 ISS desmosome
GO:0031103 IEA axon regeneration
GO:0033010 IDA paranodal junction
GO:0042552 IMP myelination
GO:0042803 IPI protein homodimerization activity
GO:0043220 IDA Schmidt-Lanterman incisure
GO:0044291 IEA cell-cell contact zone
GO:0046982 IPI protein heterodimerization activity
GO:0090022 ISS regulation of neutrophil chemotaxis
GO:0090138 IMP regulation of actin cytoskeleton organization by cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299106 JAM3-001 protein_coding Homo_sapiens 0 1005
ENST00000441717 JAM3-002 protein_coding Homo_sapiens 0 556
ENST00000524969 JAM3-006 processed_transcript Homo_sapiens 0 569
ENST00000531302 JAM3-008 retained_intron Homo_sapiens 0 651
ENST00000532165 JAM3-007 processed_transcript Homo_sapiens 0 569
ENST00000532252 JAM3-004 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000534549 JAM3-005 protein_coding Homo_sapiens 0 289

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