C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: junctional adhesion molecule 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000299106 JAM3-001 ENSG00000166086 9606 + 11:134068925-134152001 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000299106
Transcript ID Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000299106 10.955±0.00 3.697±0.00 5.018±0.00 3.309±0.00 25.327±0.00 6.550±2.02 0.542±0.00 11.309±8.65 23.753±14.71 21.852±11.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004R4 CIL_0004R4_0003 CGP 11:133908564-134152001

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IDA angiogenesis
GO:0001780 IEA neutrophil homeostasis
GO:0002250 IEA adaptive immune response
GO:0002318 IEA myeloid progenitor cell differentiation
GO:0002523 IEA leukocyte migration involved in inflammatory response
GO:0005178 IPI integrin binding
GO:0005515 IPI:IEA protein binding
GO:0005615 IDA extracellular space
GO:0005886 TAS plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005923 IEA tight junction
GO:0007160 IEA cell-matrix adhesion
GO:0007283 IEA spermatogenesis
GO:0007286 IEA spermatid development
GO:0007596 TAS blood coagulation
GO:0016021 IEA integral component of membrane
GO:0016477 IEA cell migration
GO:0019226 IEA transmission of nerve impulse
GO:0030010 IEA establishment of cell polarity
GO:0030057 IDA desmosome
GO:0030198 TAS extracellular matrix organization
GO:0031103 IEA axon regeneration
GO:0033010 IEA paranodal junction
GO:0042552 IEA myelination
GO:0042803 IEA protein homodimerization activity
GO:0043220 IEA Schmidt-Lanterman incisure
GO:0044291 IDA cell-cell contact zone
GO:0046982 IEA protein heterodimerization activity
GO:0050900 TAS leukocyte migration
GO:0090022 IDA regulation of neutrophil chemotaxis
GO:0090138 IEA regulation of actin cytoskeleton organization by cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034472 Jam3-201 protein_coding Mus_musculus 0 1005
ENSMUST00000167074 Jam3-001 protein_coding Mus_musculus 0 669

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