C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NLR family member X1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034621 Nlrx1-201 ENSMUSG00000032109 10090 - 9:44252713-44268491 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverPlacentaTestisENSMUST00000034621
Transcript ID Brain Liver Placenta Testis
ENSMUST00000034621 0.424±0.00 0.233±0.00 0.923±0.43 0.358±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068P CIL_00068P_0002 CGP 9:44247312-44268599
CIL_0006Q2 CIL_0006Q2_0002 CGP 9:44252713-44288615

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0016032 IEA viral process
GO:0032688 IMP negative regulation of interferon-beta production
GO:0032715 IMP negative regulation of interleukin-6 production
GO:0039536 IMP negative regulation of RIG-I signaling pathway
GO:0043124 IMP negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 IEA innate immune response
GO:0045824 IMP negative regulation of innate immune response
GO:0050728 IMP negative regulation of inflammatory response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292199 NLRX1-001 protein_coding Homo_sapiens 0 3278
ENST00000409109 NLRX1-004 protein_coding Homo_sapiens 0 3278
ENST00000409265 NLRX1-201 protein_coding Homo_sapiens 0 3278
ENST00000409991 NLRX1-003 protein_coding Homo_sapiens 0 3278
ENST00000469103 NLRX1-013 processed_transcript Homo_sapiens 0 673
ENST00000481860 NLRX1-012 retained_intron Homo_sapiens 0 2536
ENST00000524562 NLRX1-014 retained_intron Homo_sapiens 0 1373
ENST00000525863 NLRX1-005 protein_coding Homo_sapiens 0 2935

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