C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034720 Polr2m-001 ENSMUSG00000032199 10090 - 9:71478437-71485935 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034720 56.711±15.93 67.102±13.89 83.539±5.74 41.002±3.62 53.913±10.70 60.599±10.89 75.740±4.98 60.331±18.75 28.507±9.97 55.973±10.48 70.480±2.19 72.264±20.80 62.958±17.37 11.751±3.64

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005635 IEA nuclear envelope
GO:0016591 ISS DNA-directed RNA polymerase II, holoenzyme
GO:0032774 IEA RNA biosynthetic process
GO:0043025 IMP neuronal cell body
GO:0051685 IMP maintenance of ER location

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299638 POLR2M-001 protein_coding Homo_sapiens 0 1003
ENST00000380557 POLR2M-002 protein_coding Homo_sapiens 0 494
ENST00000380568 GCOM1-002 protein_coding Homo_sapiens 6e-37 159
ENST00000380569 GCOM1-001 protein_coding Homo_sapiens 0 291
ENST00000460962 GCOM1-007 nonsense_mediated_decay Homo_sapiens 0 667
ENST00000463717 GCOM1-005 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000464277 POLR2M-005 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000464308 POLR2M-003 processed_transcript Homo_sapiens 0 375
ENST00000468886 GCOM1-012 nonsense_mediated_decay Homo_sapiens 0 239
ENST00000471563 GCOM1-010 nonsense_mediated_decay Homo_sapiens 0 239
ENST00000477282 GCOM1-006 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000482814 GCOM1-004 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000482852 POLR2M-006 nonsense_mediated_decay Homo_sapiens 0 749
ENST00000484300 GCOM1-013 processed_transcript Homo_sapiens 0 396
ENST00000488175 GCOM1-009 nonsense_mediated_decay Homo_sapiens 0 239
ENST00000494490 POLR2M-004 nonsense_mediated_decay Homo_sapiens 0 717
ENST00000496101 GCOM1-011 nonsense_mediated_decay Homo_sapiens 0 239
ENST00000496627 GCOM1-003 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000509133 GCOM2-001 processed_pseudogene Homo_sapiens 0 774
ENST00000567643 POLR2M-007 processed_transcript Homo_sapiens 0 244
ENST00000587652 GCOM1-015 protein_coding Homo_sapiens 0 667

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