C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aldehyde dehydrogenase family 1, subfamily A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034723 Aldh1a2-001 ENSMUSG00000013584 10090 + 9:71215789-71296243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034723
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034723 20.048±18.27 17.835±1.38 15.281±3.42 2.734±0.56 2.177±0.22 4.176±1.03 3.037±0.20 4.979±0.57 0.313±0.24 9.193±1.66 1.613±0.39 23.456±5.31 1.357±0.80 35.973±3.68

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001568 IMP blood vessel development
GO:0001758 IDA retinal dehydrogenase activity
GO:0001822 IEA kidney development
GO:0001889 IEA liver development
GO:0001936 IMP regulation of endothelial cell proliferation
GO:0001947 TAS heart looping
GO:0002138 IEA retinoic acid biosynthetic process
GO:0003007 IMP heart morphogenesis
GO:0004028 IDA 3-chloroallyl aldehyde dehydrogenase activity
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0007494 IEA midgut development
GO:0007507 TAS heart development
GO:0008284 IMP positive regulation of cell proliferation
GO:0008285 IEA negative regulation of cell proliferation
GO:0009855 IMP determination of bilateral symmetry
GO:0009952 IMP anterior/posterior pattern specification
GO:0009954 IMP proximal/distal pattern formation
GO:0010628 IMP positive regulation of gene expression
GO:0014032 IMP neural crest cell development
GO:0016331 IMP morphogenesis of embryonic epithelium
GO:0016918 IEA retinal binding
GO:0021915 IEA neural tube development
GO:0021983 IEA pituitary gland development
GO:0030182 IMP neuron differentiation
GO:0030324 IMP lung development
GO:0030326 IMP embryonic limb morphogenesis
GO:0030900 IMP forebrain development
GO:0030902 IMP hindbrain development
GO:0031016 IMP pancreas development
GO:0031076 IGI embryonic camera-type eye development
GO:0032355 IEA response to estradiol
GO:0033189 IEA response to vitamin A
GO:0034097 IEA response to cytokine
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0035799 IMP ureter maturation
GO:0042572 IEA retinol metabolic process
GO:0042573 IMP retinoic acid metabolic process
GO:0042574 IDA retinal metabolic process
GO:0042904 IDA 9-cis-retinoic acid biosynthetic process
GO:0043010 IMP camera-type eye development
GO:0043065 IMP positive regulation of apoptotic process
GO:0048384 IMP retinoic acid receptor signaling pathway
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048566 IMP embryonic digestive tract development
GO:0048738 IMP cardiac muscle tissue development
GO:0055114 IEA oxidation-reduction process
GO:0060324 IGI face development
GO:0071300 IEP cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000075519 aldh1a2-001 protein_coding Danio_rerio 0 590
ENST00000249750 ALDH1A2-001 protein_coding Homo_sapiens 0 2047
ENST00000347587 ALDH1A2-002 protein_coding Homo_sapiens 0 1009
ENST00000430119 ALDH1A2-015 nonsense_mediated_decay Homo_sapiens 0 1886
ENST00000537372 ALDH1A2-201 protein_coding Homo_sapiens 0 1886
ENST00000557967 ALDH1A2-024 protein_coding Homo_sapiens 0 279
ENST00000558073 ALDH1A2-011 processed_transcript Homo_sapiens 0 239
ENST00000558231 ALDH1A2-016 protein_coding Homo_sapiens 0 1890
ENST00000558239 ALDH1A2-003 protein_coding Homo_sapiens 0 353
ENST00000558384 ALDH1A2-023 nonsense_mediated_decay Homo_sapiens 1e-28 130
ENST00000558595 ALDH1A2-019 processed_transcript Homo_sapiens 0 510
ENST00000559266 ALDH1A2-020 processed_transcript Homo_sapiens 0 355
ENST00000559297 ALDH1A2-008 processed_transcript Homo_sapiens 5.00264e-43 178
ENST00000559517 ALDH1A2-017 protein_coding Homo_sapiens 0 1729
ENST00000560312 ALDH1A2-018 retained_intron Homo_sapiens 0 869
ENST00000560923 ALDH1A2-022 processed_transcript Homo_sapiens 0 375
ENST00000561070 ALDH1A2-021 protein_coding Homo_sapiens 0 566

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