C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: expressed sequence AI118078
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034862 AI118078-001 ENSMUSG00000032313 10090 + 9:55326949-55438345 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034862 0.079±0.01 0.606±0.24 0.147±0.00 1.109±0.38 0.251±0.14 0.527±0.10 0.702±0.30 0.119±0.06 0.244±0.29 0.139±0.02 0.699±0.30 2.153±1.54 0.423±0.50 0.184±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024A CIL_00024A_0002 CGP 9:55220222-55438345
CIL_000247 CIL_000247_0002 CGP 9:55326913-55512243

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IBA voltage-gated calcium channel activity
GO:0005886 IBA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0070509 IBA calcium ion import
GO:0070588 IBA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000388942 C15orf27-001 protein_coding Homo_sapiens 0 2065
ENST00000484722 C15orf27-002 nonsense_mediated_decay Homo_sapiens 0 1378
ENST00000558249 C15orf27-003 retained_intron Homo_sapiens 0 850
ENST00000561302 C15orf27-005 nonsense_mediated_decay Homo_sapiens 0 1098

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