C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxia telangiectasia and Rad3 related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034980 Atr-001 ENSMUSG00000032409 10090 + 9:95857597-95951644 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034980
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034980 1.971±0.52 1.340±0.05 2.322±0.19 2.365±0.73 1.496±0.21 0.814±0.16 0.983±0.11 1.186±0.14 1.156±0.65 1.559±0.21 0.562±0.10 2.201±1.27 2.340±0.74 13.001±5.91

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 IMP DNA damage checkpoint
GO:0001741 IDA XY body
GO:0004672 IDA protein kinase activity
GO:0005524 IEA ATP binding
GO:0005634 TAS nucleus
GO:0006281 IDA DNA repair
GO:0006468 IDA protein phosphorylation
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0008156 IEA negative regulation of DNA replication
GO:0016605 IEA PML body
GO:0018105 IEA peptidyl-serine phosphorylation
GO:0032405 IEA MutLalpha complex binding
GO:0032407 IEA MutSalpha complex binding
GO:0034644 IEA cellular response to UV
GO:0042493 IEA response to drug
GO:0043393 IDA regulation of protein binding
GO:0043517 IEA positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0046777 IEA protein autophosphorylation
GO:0071480 IEA cellular response to gamma radiation
GO:0090399 IEA replicative senescence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111604 atr-201 protein_coding Danio_rerio 0 632
ENSDART00000144801 atr-001 protein_coding Danio_rerio 0 632
ENST00000350721 ATR-001 protein_coding Homo_sapiens 0 9588
ENST00000504521 ATR-013 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000507620 ATR-007 retained_intron Homo_sapiens 0 425
ENST00000511016 ATR-010 retained_intron Homo_sapiens 0 375
ENST00000513291 ATR-002 protein_coding Homo_sapiens 0 1724
ENST00000514393 ATR-008 processed_transcript Homo_sapiens 0 632
ENST00000515149 ATR-005 protein_coding Homo_sapiens 0 580
ENST00000515810 ATR-014 nonsense_mediated_decay Homo_sapiens 0 259
ENST00000515863 ATR-011 retained_intron Homo_sapiens 0 507

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