C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5'-3' exoribonuclease 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034981 Xrn1-201 ENSMUSG00000032410 10090 + 9:95954760-96053027 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001B7 CIL_0001B7_0002 CGP 9:95954760-96184608

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0005515 IEA protein binding
GO:0008409 IEA 5'-3' exonuclease activity
GO:0016020 IEA membrane
GO:0016075 IEA rRNA catabolic process
GO:0044822 IEA poly(A) RNA binding
GO:0071028 IEA nuclear mRNA surveillance
GO:0071044 IEA histone mRNA catabolic process
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264951 XRN1-001 protein_coding Homo_sapiens 0 5206
ENST00000392981 XRN1-004 protein_coding Homo_sapiens 0 5142
ENST00000463916 XRN1-003 protein_coding Homo_sapiens 0 1977
ENST00000465507 XRN1-010 retained_intron Homo_sapiens 0 346
ENST00000467077 XRN1-014 retained_intron Homo_sapiens 0 579
ENST00000468894 XRN1-013 processed_transcript Homo_sapiens 2e-35 152
ENST00000470537 XRN1-007 retained_intron Homo_sapiens 0 678
ENST00000472625 XRN1-011 retained_intron Homo_sapiens 0 473
ENST00000472697 XRN1-005 retained_intron Homo_sapiens 0 3304
ENST00000477237 XRN1-009 protein_coding Homo_sapiens 0 941
ENST00000486211 XRN1-002 nonsense_mediated_decay Homo_sapiens 0 959
ENST00000489241 XRN1-012 nonsense_mediated_decay Homo_sapiens 0 187
ENST00000498077 XRN1-006 protein_coding Homo_sapiens 0 2861

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