C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: 5'-3' exoribonuclease 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032410 Xrn1 10090 + 9:95954760-96057803 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034981 Xrn1-201 95954760-96053027 protein_coding
  ENSMUST00000185633 Xrn1-001 95954767-96057803 protein_coding
  ENSMUST00000185759 Xrn1-007 95971745-95975359 retained_intron
  ENSMUST00000187175 Xrn1-002 95954859-96053027 retained_intron
  ENSMUST00000187359 Xrn1-006 96017463-96020508 retained_intron
  ENSMUST00000189106 Xrn1-009 95954793-95967770 protein_coding
  ENSMUST00000189612 Xrn1-005 95954832-96000394 retained_intron
  ENSMUST00000189806 Xrn1-008 95973517-95978333 retained_intron
  ENSMUST00000190665 Xrn1-003 95954862-96011865 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000185633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000185633 1.790±0.43 0.961±0.00 2.794±1.37 2.559±0.47 1.961±1.10 1.343±0.14 0.750±0.23 1.119±0.34 1.524±0.87 2.552±0.33 1.012±0.28 2.261±1.11 2.779±0.87 2.360±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001B7 CIL_0001B7_0002 CGP 9:95954760-96184608

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0005515 IEA protein binding
GO:0008409 IEA 5'-3' exonuclease activity
GO:0016020 IEA membrane
GO:0016075 IEA rRNA catabolic process
GO:0044822 IEA poly(A) RNA binding
GO:0071028 IEA nuclear mRNA surveillance
GO:0071044 IEA histone mRNA catabolic process
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091652 xrn1 5'-3' exoribonuclease 1 protein_coding Danio_rerio
ENSG00000114127 XRN1 5'-3' exoribonuclease 1 protein_coding Homo_sapiens

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