C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5'-3' exoribonuclease 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392981 XRN1-004 ENSG00000114127 9606 - 3:142311261-142447992 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverMuscleENST00000392981
Transcript ID Breast Colon Heart Liver Muscle
ENST00000392981 2.263±0.00 1.948±0.00 0.485±0.00 2.817±0.00 1.000±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000956 IMP:IEA nuclear-transcribed mRNA catabolic process
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004527 IEA exonuclease activity
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0008409 IEA 5'-3' exonuclease activity
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016075 IMP rRNA catabolic process
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0071028 IMP nuclear mRNA surveillance
GO:0071044 IMP histone mRNA catabolic process
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034981 Xrn1-201 protein_coding Mus_musculus 0 5142
ENSMUST00000185633 Xrn1-001 protein_coding Mus_musculus 0 5142
ENSMUST00000187175 Xrn1-002 retained_intron Mus_musculus 0 5112
ENSMUST00000189612 Xrn1-005 retained_intron Mus_musculus 0 3441
ENSMUST00000190665 Xrn1-003 protein_coding Mus_musculus 0 2660
ENSMUST00000189806 Xrn1-008 retained_intron Mus_musculus 0 342
ENSMUST00000189106 Xrn1-009 protein_coding Mus_musculus 0 313
ENSMUST00000185759 Xrn1-007 retained_intron Mus_musculus 0 261

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