C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035493 Hnrnpf-001 ENSMUSG00000042079 10090 + 6:117906795-117925619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035493
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035493 10.921±2.25 8.376±0.00 30.137±6.07 30.447±19.91 7.405±4.16 9.403±0.47 4.627±0.67 10.924±4.74 61.754±61.11 12.700±0.00 8.982±2.76 19.445±8.66 59.431±27.65 54.026±3.59

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003727 ISS single-stranded RNA binding
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043484 ISS regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337970 HNRNPF-004 protein_coding Homo_sapiens 0 2617
ENST00000356053 HNRNPF-005 protein_coding Homo_sapiens 0 2617
ENST00000357065 HNRNPF-001 protein_coding Homo_sapiens 0 2617
ENST00000443950 HNRNPF-201 protein_coding Homo_sapiens 0 2617
ENST00000477108 HNRNPF-003 processed_transcript Homo_sapiens 0 503
ENST00000498176 HNRNPF-002 processed_transcript Homo_sapiens 0 416
ENST00000544000 HNRNPF-202 protein_coding Homo_sapiens 0 2615

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