C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal sequence receptor, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035785 Ssr2-201 ENSMUSG00000041355 10090 + 3:88579671-88588397 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035785
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035785 20.841±1.07 20.470±8.28 39.555±0.00 24.200±11.36 8.777±1.74 31.506±21.58 4.181±0.41 33.827±14.88 40.869±32.69 30.925±14.85 17.733±0.00 33.953±23.86 170.528±4.48 31.116±16.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295702 SSR2-001 protein_coding Homo_sapiens 0 730
ENST00000368311 SSR2-002 retained_intron Homo_sapiens 0 449
ENST00000466905 SSR2-009 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000472467 SSR2-003 retained_intron Homo_sapiens 0 283
ENST00000472898 SSR2-010 retained_intron Homo_sapiens 0 560
ENST00000473699 SSR2-005 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000474377 SSR2-011 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000480176 SSR2-004 retained_intron Homo_sapiens 0 320
ENST00000480567 SSR2-008 protein_coding Homo_sapiens 0 728
ENST00000484320 SSR2-006 retained_intron Homo_sapiens 0 414
ENST00000488179 SSR2-012 retained_intron Homo_sapiens 0 453
ENST00000496742 SSR2-007 protein_coding Homo_sapiens 0 283
ENST00000526212 SSR2-018 protein_coding Homo_sapiens 0 316
ENST00000529008 SSR2-014 protein_coding Homo_sapiens 0 322
ENST00000531790 SSR2-016 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000531917 SSR2-017 protein_coding Homo_sapiens 0 558
ENST00000532074 SSR2-015 retained_intron Homo_sapiens 0 717

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