C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TOPBP1-interacting checkpoint and replication regulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035977 Ticrr-201 ENSMUSG00000046591 10090 + 7:79660196-79698134 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000035977
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000035977 0.603±0.03 0.184±0.00 1.086±0.15 0.193±0.07 0.745±0.18 0.031±0.00 1.615±1.50 0.015±0.01 1.469±0.25 1.746±0.96 1.047±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011D CIL_00011D_0002 CGP 7:79593363-79698134
CIL_00008C CIL_00008C_0002 CGP 7:79660196-79715720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000075 ISS cell cycle checkpoint
GO:0001731 ISS formation of translation preinitiation complex
GO:0003682 ISS chromatin binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006260 ISS DNA replication
GO:0006281 ISS DNA repair
GO:0010212 ISS response to ionizing radiation
GO:0030174 ISS regulation of DNA-dependent DNA replication initiation
GO:0033314 ISS mitotic DNA replication checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268138 TICRR-001 protein_coding Homo_sapiens 0 3001
ENST00000560985 TICRR-003 protein_coding Homo_sapiens 0 3005

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