C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TOPBP1-interacting checkpoint and replication regulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560985 TICRR-003 ENSG00000140534 9606 + 15:89575587-89628012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000560985
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000560985 0.207±0.00 0.478±0.00 0.064±0.04 0.144±0.00 0.488±0.00 0.047±0.01 0.063±0.05 0.053±0.00 0.475±0.07 0.269±0.11 1.057±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011D CIL_00011D_0001 CGP 15:89471398-89631056
CIL_00008C CIL_00008C_0001 CGP 15:89575482-89655451

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000075 ISS cell cycle checkpoint
GO:0001731 ISS formation of translation preinitiation complex
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006260 ISS DNA replication
GO:0006281 ISS DNA repair
GO:0010212 ISS response to ionizing radiation
GO:0030174 IMP regulation of DNA-dependent DNA replication initiation
GO:0033314 ISS mitotic DNA replication checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035977 Ticrr-201 protein_coding Mus_musculus 0 3005

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