C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fraser syndrome 1 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036019 Fras1-201 ENSMUSG00000034687 10090 + 5:96373955-96784728 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036019
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036019 0.517±0.41 0.255±0.05 1.150±0.34 0.993±0.31 0.128±0.06 0.216±0.04 0.230±0.12 1.876±0.50 0.201±0.11 0.907±0.36 0.300±0.05 1.246±0.44 1.061±1.27 0.116±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051W CIL_00051W_0003 CGP 5:96209493-96784728
CIL_000522 CIL_000522_0003 CGP 5:96373955-96845968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002009 IMP morphogenesis of an epithelium
GO:0003338 IMP metanephros morphogenesis
GO:0005604 IDA basement membrane
GO:0005886 IEA plasma membrane
GO:0007154 IEA cell communication
GO:0015031 IMP protein transport
GO:0016021 IEA integral component of membrane
GO:0030326 IMP embryonic limb morphogenesis
GO:0043588 IMP skin development
GO:0046872 IEA metal ion binding
GO:0060021 IMP palate development
GO:0061618 IDA sublamina densa

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325942 FRAS1-001 protein_coding Homo_sapiens 0 5186
ENST00000502446 FRAS1-004 protein_coding Homo_sapiens 0 1712
ENST00000508900 FRAS1-005 protein_coding Homo_sapiens 0 1722
ENST00000510944 FRAS1-007 protein_coding Homo_sapiens 0 942
ENST00000512123 FRAS1-008 protein_coding Homo_sapiens 0 7465

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