C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth arrest and DNA-damage-inducible, gamma interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036734 Gadd45gip1-001 ENSMUSG00000033751 10090 + 8:84831522-84835482 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036734 10.969±5.82 82.291±53.20 5.774±0.00 10.910±2.70 27.420±15.05 23.885±3.03 4.075±0.59 17.946±8.45 17.823±5.76 14.504±3.96 6.865±0.44 58.351±35.39 9.408±3.62 5.655±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0007049 IEA cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316856 RAD23A-001 protein_coding Homo_sapiens 0 327
ENST00000316939 GADD45GIP1-001 protein_coding Homo_sapiens 0 542
ENST00000586375 RAD23A-010 nonsense_mediated_decay Homo_sapiens 4e-31 139
ENST00000586534 RAD23A-002 protein_coding Homo_sapiens 0 357
ENST00000590881 RAD23A-008 protein_coding Homo_sapiens 0 298
ENST00000592268 RAD23A-005 protein_coding Homo_sapiens 0 291
ENST00000593114 RAD23A-004 nonsense_mediated_decay Homo_sapiens 0 315

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