C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth arrest and DNA-damage-inducible, gamma interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316939 GADD45GIP1-001 ENSG00000179271 9606 - 19:12953119-12957236 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316939
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316939 40.328±0.00 53.962±0.00 1.348±0.00 18.126±11.36 26.000±23.31 26.693±24.03 21.384±17.08 23.393±18.35 15.533±13.04 25.701±23.65 295.343±0.00 29.911±16.34 54.882±11.28 39.569±10.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IEA mitochondrion
GO:0007049 IEA cell cycle
GO:0016032 IEA viral process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036734 Gadd45gip1-001 protein_coding Mus_musculus 0 542
ENSMUST00000109761 Rad23a-001 protein_coding Mus_musculus 0 363
ENSMUST00000003911 Rad23a-002 protein_coding Mus_musculus 0 363
ENSMUST00000144675 Rad23a-007 protein_coding Mus_musculus 0 219

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