C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LETM1 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037001 Letmd1-201 ENSMUSG00000037353 10090 + 15:100469034-100479252 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037001
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037001 30.342±10.52 46.435±3.53 18.557±0.38 13.498±6.52 23.664±12.11 13.952±1.55 8.042±2.75 21.408±5.69 14.293±3.39 12.507±3.56 2.483±0.75 18.075±4.50 7.049±3.04 4.401±2.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B3 CIL_0007B3_0002 CGP 15:100469034-100495239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262055 LETMD1-001 protein_coding Homo_sapiens 0 1118
ENST00000380135 LETMD1-010 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000418425 LETMD1-006 protein_coding Homo_sapiens 0 647
ENST00000546814 LETMD1-030 retained_intron Homo_sapiens 0 392
ENST00000546992 LETMD1-020 retained_intron Homo_sapiens 0 460
ENST00000547008 LETMD1-008 protein_coding Homo_sapiens 0 472
ENST00000547029 LETMD1-023 processed_transcript Homo_sapiens 0 254
ENST00000547256 LETMD1-036 protein_coding Homo_sapiens 2e-38 163
ENST00000547318 LETMD1-002 nonsense_mediated_decay Homo_sapiens 0 647
ENST00000547555 LETMD1-004 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000547660 LETMD1-027 protein_coding Homo_sapiens 0 375
ENST00000547877 LETMD1-011 retained_intron Homo_sapiens 3e-36 158
ENST00000548209 LETMD1-024 protein_coding Homo_sapiens 0 331
ENST00000548251 LETMD1-025 protein_coding Homo_sapiens 0 335
ENST00000548390 LETMD1-018 retained_intron Homo_sapiens 0 333
ENST00000548516 LETMD1-032 processed_transcript Homo_sapiens 0 254
ENST00000549340 LETMD1-019 protein_coding Homo_sapiens 0 403
ENST00000549395 LETMD1-039 processed_transcript Homo_sapiens 0 213
ENST00000549686 LETMD1-029 nonsense_mediated_decay Homo_sapiens 0 392
ENST00000550100 LETMD1-009 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000550274 LETMD1-035 retained_intron Homo_sapiens 0 209
ENST00000550442 LETMD1-034 protein_coding Homo_sapiens 0 473
ENST00000550446 LETMD1-033 processed_transcript Homo_sapiens 0 331
ENST00000550715 LETMD1-005 retained_intron Homo_sapiens 0 331
ENST00000550755 LETMD1-021 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000550814 LETMD1-026 protein_coding Homo_sapiens 0 237
ENST00000550929 LETMD1-003 protein_coding Homo_sapiens 0 974
ENST00000551261 LETMD1-022 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000551477 LETMD1-015 protein_coding Homo_sapiens 0 778
ENST00000551931 LETMD1-037 protein_coding Homo_sapiens 0 407
ENST00000552433 LETMD1-031 retained_intron Homo_sapiens 0 211
ENST00000552645 LETMD1-013 retained_intron Homo_sapiens 0 407
ENST00000552739 LETMD1-012 protein_coding Homo_sapiens 0 562
ENST00000553043 LETMD1-038 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000623495 LETMD1-014 TEC Homo_sapiens 4e-36 158

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