C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin-related family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037145 Cdhr2-001 ENSMUSG00000034918 10090 + 13:54701461-54736662 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000037145
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000037145 0.034±0.02 0.014±0.00 0.010±0.00 0.079±0.03 0.028±0.01 166.880±9.60 0.014±0.01 15.635±2.32 3.598±3.57 0.253±0.25 0.132±0.07 8.461±8.69 0.194±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0000OY CIL_0000OY_0003 CGP 13:54679399-54736662
CIL_0002N6 CIL_0002N6_0002 CGP 13:54701461-54749874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane
GO:0030308 IEA negative regulation of cell growth
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261944 CDHR2-003 protein_coding Homo_sapiens 0 2470
ENST00000506348 CDHR2-002 protein_coding Homo_sapiens 0 2470
ENST00000510636 CDHR2-001 protein_coding Homo_sapiens 0 2470

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