C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: copper chaperone for superoxide dismutase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037246 Ccs-201 ENSMUSG00000034108 10090 - 19:4825366-4839322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037246
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037246 22.760±2.03 46.062±9.35 30.551±5.66 17.339±9.35 14.129±4.51 26.760±2.09 11.662±2.22 82.172±9.44 90.967±47.57 21.397±1.42 8.664±1.11 34.962±6.97 31.331±9.18 31.094±6.48

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004784 IBA superoxide dismutase activity
GO:0005507 IBA copper ion binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IBA cytoplasm
GO:0008270 IBA zinc ion binding
GO:0019430 IBA removal of superoxide radicals
GO:0030001 IEA metal ion transport
GO:0051353 IMP positive regulation of oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310190 CCS-009 protein_coding Homo_sapiens 0 881
ENST00000525435 CCS-003 retained_intron Homo_sapiens 0 427
ENST00000530384 CCS-002 retained_intron Homo_sapiens 0 667
ENST00000530961 CCS-005 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000531990 CCS-006 retained_intron Homo_sapiens 0 243
ENST00000533244 CCS-001 protein_coding Homo_sapiens 0 891
ENST00000534763 CCS-007 protein_coding Homo_sapiens 0 427

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