C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: copper chaperone for superoxide dismutase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533244 CCS-001 ENSG00000173992 9606 + 11:66592821-66606019 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000533244
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000533244 11.974±0.00 9.843±0.00 0.318±0.00 7.418±0.00 9.020±8.44 13.709±0.00 0.192±0.00 10.646±0.00 8.656±0.00 4.508±0.00 3.306±0.00 16.731±16.35 13.544±1.70 17.895±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YI CIL_0003YI_0002 CGP 11:66592821-66627347

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004784 IEA:IBA superoxide dismutase activity
GO:0005375 TAS copper ion transmembrane transporter activity
GO:0005507 IBA copper ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006801 TAS:IEA superoxide metabolic process
GO:0008270 IBA zinc ion binding
GO:0015035 TAS protein disulfide oxidoreductase activity
GO:0015680 TAS intracellular copper ion transport
GO:0019430 IEA:IBA removal of superoxide radicals
GO:0030001 IEA metal ion transport
GO:0035434 TAS copper ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0051353 IEA positive regulation of oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037246 Ccs-201 protein_coding Mus_musculus 0 891

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