C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038379 Cpsf7-201 ENSMUSG00000034820 10090 + 19:10525244-10547735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038379
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038379 18.712±5.45 12.694±1.87 26.565±1.49 29.431±17.12 15.671±3.01 9.363±2.81 9.298±0.60 10.377±0.45 11.912±8.27 16.931±2.65 4.880±1.21 14.723±5.04 9.057±6.12 6.969±3.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0002 VISTA 19:10121785-10724671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005849 ISS mRNA cleavage factor complex
GO:0006397 IEA mRNA processing
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding
GO:0051262 IEA protein tetramerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340437 CPSF7-001 protein_coding Homo_sapiens 0 3607
ENST00000394888 CPSF7-006 protein_coding Homo_sapiens 0 3742
ENST00000413184 CPSF7-017 protein_coding Homo_sapiens 0 640
ENST00000413232 CPSF7-002 protein_coding Homo_sapiens 0 795
ENST00000439958 CPSF7-005 protein_coding Homo_sapiens 0 3430
ENST00000448745 CPSF7-007 protein_coding Homo_sapiens 0 2266
ENST00000449811 CPSF7-010 protein_coding Homo_sapiens 0 656
ENST00000450000 CPSF7-003 protein_coding Homo_sapiens 0 662
ENST00000463244 CPSF7-024 processed_transcript Homo_sapiens 0 531
ENST00000474684 CPSF7-009 retained_intron Homo_sapiens 0 278
ENST00000477890 CPSF7-027 protein_coding Homo_sapiens 0 977
ENST00000489728 CPSF7-011 retained_intron Homo_sapiens 0 405
ENST00000494016 CPSF7-014 processed_transcript Homo_sapiens 0 381
ENST00000535222 CPSF7-019 nonsense_mediated_decay Homo_sapiens 0 606
ENST00000536145 CPSF7-022 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000536548 CPSF7-004 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000537162 CPSF7-020 nonsense_mediated_decay Homo_sapiens 0 525
ENST00000537641 CPSF7-018 retained_intron Homo_sapiens 0 684
ENST00000539952 CPSF7-015 protein_coding Homo_sapiens 0 1197
ENST00000541963 CPSF7-025 protein_coding Homo_sapiens 0 449
ENST00000543545 CPSF7-023 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000544585 CPSF7-013 protein_coding Homo_sapiens 0 881
ENST00000544669 CPSF7-012 retained_intron Homo_sapiens 0 968
ENST00000544990 CPSF7-026 nonsense_mediated_decay Homo_sapiens 0 444
ENST00000545934 CPSF7-016 processed_transcript Homo_sapiens 0 403

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