C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DnaJ (Hsp40) homolog, subfamily C, member 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038439 Dnajc17-001 ENSMUSG00000034278 10090 - 2:119172500-119208795 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000038439
Transcript ID Adrenal Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000038439 5.496±0.00 13.042±2.71 11.938±0.63 8.151±2.19 4.490±0.33 13.786±4.61 13.933±7.36 7.207±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070D CIL_00070D_0002 CGP 2:119167773-119208795
CIL_000793 CIL_000793_0002 CGP 2:119172500-119208795

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220496 DNAJC17-001 protein_coding Homo_sapiens 0 1142
ENST00000441105 AC092638.2-001 processed_pseudogene Homo_sapiens 0 466
ENST00000559238 DNAJC17-005 nonsense_mediated_decay Homo_sapiens 0 939
ENST00000559310 DNAJC17-006 nonsense_mediated_decay Homo_sapiens 0 525
ENST00000560065 DNAJC17-011 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000560301 DNAJC17-002 retained_intron Homo_sapiens 0 422
ENST00000560645 DNAJC17-004 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000561018 DNAJC17-003 nonsense_mediated_decay Homo_sapiens 0 525
ENST00000561044 DNAJC17-007 processed_transcript Homo_sapiens 1e-38 163
ENST00000561110 DNAJC17-009 retained_intron Homo_sapiens 0 544

Loading