C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tenascin N
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039178 Tnn-001 ENSMUSG00000026725 10090 - 1:160085036-160153580 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000039178
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000039178 0.020±0.01 0.024±0.00 0.081±0.03 0.055±0.05 0.100±0.03 0.050±0.01 0.029±0.01 0.840±0.31 0.017±0.02 0.017±0.01 0.040±0.01 0.017±0.01 0.020±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EK CIL_0002EK_0002 CGP 1:160085036-160202170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IDA integrin binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0007160 IDA cell-matrix adhesion
GO:0007409 IDA axonogenesis
GO:0009986 IDA cell surface
GO:0016049 IDA cell growth
GO:0016477 IDA cell migration
GO:0042802 IDA identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239462 TNN-001 protein_coding Homo_sapiens 0 2495
ENST00000621086 TNN-201 protein_coding Homo_sapiens 0 2095
ENST00000622870 TNN-202 protein_coding Homo_sapiens 0 2115

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